snpEff is a fast variant effect predictor (SNP, MNP and InDels) for genomic data. It is integrated with Galaxy so it can be used either as a command line or as a web application.
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User Reviews
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One of the best app for amateurs to play with genome data.
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Best annotation app. We are happily using for ngs annotation. Author replied every email support request so fast and helpfully. Thanks again for great support, updates and features.
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Great!
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Great tools to predict variant impact using VCF file.
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Very nice app :)